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Sequences & 3D models

Below are fixed pre-compiled database outputs

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Agouti-related	Alpha-amylase inhibitor	Algae	Bacteria	Bug
Ciliate	Conotoxin1	Conotoxin2	Conotoxin3	Cyclotide
Fungi1	Fungi2	Gurmarin-like	Horseshoe crab	Insect1
Insect2	Maize	Metallocarboxypeptidase inhibitor	Mycetozoa	Plant antimicrobial
Plant defensin	Plant toxin	Plant toxin2	Scorpion1	Scorpion2
Serine protease inhibitor1	Serine protease inhibitor2	Serine protease inhibitor3	Spider	Sponge
Trematoda	Trichoplax	Virus1	Virus2	Water flea

Please note the link significations in the following table
	points at individual protein cards (sequence, "Colliers de Perles" ...)
Jmol	runs the Jmol viewing applet (loops '(a)', 'b', 'c', '(d)' and 'e' are colored green, salmon, aquamarine, light blue and pink, respectively
3D model	point at PDB files containing modeled 3D structures for download
	Note: superimposed PDBs and/or 3D models can be viewed (Jmol) using the checkboxes and the form below

Plant antimicrobial

23 sequences for Plant antimicrobial knottins

To display Sequence alignments OR Jmol Structural superimpositions of selected knottins:
1 - Use the checkboxes to make selection or use the 'Select All' button
2 - Choose either a 1D Sequence alignment or a 3D Structural superimposition

	Nomenclature	SwissProt	PDB	Family	Descriptor	Source	Tissue	Authors	PubMed
	Jmol (6)6.0(4)4	A0PGP5_PANGI Pfam	3D model	Plant antimicrobial	Specific abundant protein 2	Panax ginseng (Korean ginseng)	_	_...	_
					MENKKVALVV VAMVVVLIST VAPLAMAVDD AGSSDGLIAV ESVSRSNGGN GDSVAVDTVSWVSSNRKTLR SKIFLPQGYL PDGGLGCKSA GTWCGFDPHG CCGSCGCLVG FCYGVSC
	Jmol (6)6.0(4)4	A0PGP6_PANGI Pfam	3D model	Plant antimicrobial	Specific abundant protein 1	Panax ginseng (Korean ginseng)	_	_...	_
					MENKKVALVV VAMVVVLIST FAPLALAADE AGRSDGGNGD LIAVESVSRS NGGNGDSVTVDTVSWVSSNR KTLRSSIFLP QGYLPDGGLG CKSSGAWCGF DPHGCCGNCG CLVGFCYGTGC
	Jmol (6)6.0(4)4	A0PGP7_PANGI Pfam	3D model	Plant antimicrobial	Specific abundant protein 3	Panax ginseng (Korean ginseng)	_	_...	_
					MENKKVALVV VAMVVVLIST FAPLALAADE AGRSDGGNGD LIAVESVSRS NGGNGDSVTVDTVSWVSSNR KTLRSSIFLP QGYLPDGGLG CKSGGAWCGF DPHGCCGNCG CLVGFCYGTGC
	Jmol (6)6.0(4)4	A9QMA6_PANQU Pfam	3D model	Plant antimicrobial	Putative uncharacterized protein	Panax quinquefolius (American ginseng) (Aralia quinquefolia)	_	_...	_
					MDNKKVALVV VAMVVVLIST FAPLALAADE AGRSDGGNGD LIAVESVSRS NGGNGDSVTVDTVSWVSSNR KTLRSSIFLP QGYLPDGGLG CIFSGGWCGF DLHGCCGNCG CLVGFCYGTGC
	Jmol (6)6.0(4)4	A9QW61_PANQU Pfam	3D model	Plant antimicrobial	Specific abundant protein-like protein 1	Panax quinquefolius (American ginseng) (Aralia quinquefolia)	_	_...	_
					MDNKKVALVV VAMVVVLIST FAPLALAADE AGRSDGGNGD LIAVESVSRS NGGNGDSVTVDTVSWVSSNR KTLRSSIFLP QGYLPDGGLG CISSGGWCGF DLHGCCGNCG CLVGFCYGTGC
	Jmol (6)8.0(3)10	AMP1_MESCR Pfam	3D model	Plant antimicrobial	Antimicrobial peptide 1	Mesembryanthemum crystallinum (Common ice plant) (Cryophytumcrystallinum)	_	_...	_
					MAKVSSSLLK FAIVLILVLS MSAIISAKCI KNGKGCREDQ GPPFCCSGFC YRQVGWARGYCKNR
	Jmol (6)8.0(3)10	AMP1_MIRJA Pfam	3D model	Plant antimicrobial	Antimicrobial peptide 1 (AMP1)	Mirabilis jalapa (Garden four-o'clock)	Seed	de Bolle M.F., Eggermont K., Duncan R.E....	7647302
					LPVAFLKFAI VLILFIAMSA MIEAQCIGNG GRCNENVGPP YCCSGFCLRQ PGQGYGYCKNR
	Jmol (6)8.0(3)10	AMP2_MIRJA Pfam	3D model	Plant antimicrobial	Antimicrobial peptide 2 (AMP2)	Mirabilis jalapa (Garden four-o'clock)	Seed	de Bolle M.F., Eggermont K., Duncan R.E....	7647302
					MAKVPIAFLK FVIVLILFIA MSGMIEACIG NGGRCNENVG PPYCCSGFCL RQPNQGYGVCRNR
	Jmol (7)6.0(3)7	B9H5R3_POPTR Pfam	3D model	Plant antimicrobial	Predicted protein	Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa)	_	Tuskan G.A., Difazio S., Jansson S., Boh...	16973872
					MDSKKVSLFL IVSLLFMATI SPCAFSMREI PLTSDGVDEI TTSNTKNIPL SNVMMPKSADKCLPPGTSPC LIGDVGCCSG ICLLIWPPVC G
	Jmol (6)6.0(4)6	B9MYB2_POPTR Pfam	3D model	Plant antimicrobial	Predicted protein	Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa)	_	Tuskan G.A., Difazio S., Jansson S., Boh...	16973872
					MDSKKVTLLL MVALVFVATI APSSLAMRQF PLLMTSNILL QDESNLGACL PSGGFCFFQPKNCCGNCGCL YPIGICFGSD C
	Jmol (6)6.0(4)6	B9MYB3_POPTR Pfam	3D model	Plant antimicrobial	Predicted protein	Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa)	_	Tuskan G.A., Difazio S., Jansson S., Boh...	16973872
					MDSKKVTLLL MVALVFVATI APSALAMRQF PLLMTSNILL QDESNLGCIS SGGWCFPNPKNCCGNCGCLY PIGICFGSDC
	Jmol (6)6.0(4)6	B9MYB4_POPTR Pfam	3D model	Plant antimicrobial	Predicted protein	Populus trichocarpa (Western balsam poplar) (Populus balsamiferasubsp. trichocarpa)	_	Tuskan G.A., Difazio S., Jansson S., Boh...	16973872
					MEIISKKISS LMMLIVAFTF MAAFAHSTLA MRLIPPLSDI MYAQGEANCL DKGGFCMFSPMDCCGSMGCL YPMGICF
	Jmol (6)7.0(2)11	D2KZ18_9ARAE Pfam	3D model	Plant antimicrobial	Putative uncharacterized protein	Epipremnum aureum	_	_...	_
					MGRKTLVIMA VFVMVSLGIT KSPPAVDASR GLSASILLKS DGLDVPRALV DPNASQRASDDPYCRRDGDF CGPGAWHDCC SDCHCTGFAY SHCVCP
	Jmol (6)8.0(3)10	PAFP_PHYAM Pfam	1dkcA	Plant antimicrobial	Antimicrobial peptide 1 (AMP1)	Phytolacca americana (American pokeweed) (Phytolacca decandra)	Seed	Liu Y., Luo J., Xu C., Ren F., Peng C., ...	10759497
					MAKVSSAYLK FALVMILLLS VISAVMSAGC IKNGGRCNAS AGPPYCCSSY CFQIAGQSYGVCKNR
	Jmol (6)8.0(3)10	Q54AI2_PHYAM Pfam	3D model	Plant antimicrobial	Anti-fungal protein	Phytolacca americana (American pokeweed) (Phytolacca decandra)	_	_...	_
					MAKVSSAYLK FALVMILLLS VISAVMSAGC IKNGGRCNAS AGPPYCCSSY CFQIAGQSYGVCKNR
	Jmol (6)8.0(3)10	Q9SDS1_PHYAM Pfam	3D model	Plant antimicrobial	Antimicrobial seed protein	Phytolacca americana (American pokeweed) (Phytolacca decandra)	_	Liu Y., Luo J., Xu C., Ren F., Peng C., ...	10759497
					ACIKNGGRCV ASGGPPYCCS NYCLQIAGQS YGVCKKH
	Jmol (6)6.0(2)8	A0A0D3HJH4_9ORYZ Pfam	3D model	Plant antimicrobial	Uncharacterized protein	Oryza barthii	-	-	-
					MAVVAILAAL LLMEPALATA PSLVPARKLQ MPRLMDVISA ESKLACLPAG GFCFARPMDC CGNCGCLYPF GICYGSRCVE
	Jmol (6)6.0(2)8	A0A0E0BGM4_9ORYZ Pfam	3D model	Plant antimicrobial	Uncharacterized protein	Oryza glumipatula	-	-	-
					MASTKMAVVA ILAALLLMAA VEPALATPPS LLPARKLQMP RLMDVISAES KLACLPAGGF CMFRPMDCCG NCGCLYPIGV CYGSRCEE
	Jmol (6)6.0(2)8	A2ZCK3_ORYSI Pfam	3D model	Plant antimicrobial	Putative uncharacterized protein	Oryza sativa Indica Group	-	-	-
					MASTKMPVVX XXXXXXXXXX XXXXXXTAPS LVPARKLQMP RIMDVISAES KLACLPAGGF CMFRPMDCCG NCGCLYPVGV CYGSRCEE
	Jmol (6)6.0(2)8	A6N1F7_ORYSI Pfam	3D model	Plant antimicrobial	Putative uncharacterized protein	Oryza sativa Indica Group	-	-	-
					REAMASTKMA VVXXXXXXXX XXXXXXXXXT APSLVPARKL QMPRFMDVIS AESKLACLPA GGFCMFRPMD CCGNCGCLYP VGVCYGSRCE E
	Jmol (6)6.0(2)8	I1QYK5_ORYGL Pfam	3D model	Plant antimicrobial	Uncharacterized protein	Oryza glaberrima	-	-	-
					MASTKMAVVX XXXXXXXXXX XXXXXXTAPS LVPARKLQMP RIMDVISAES KLACLPAGGF CMFRPMDCCG NCGCLYPVGV CYGSRCEE
	Jmol (6)6.0(2)8	Q2R8Y4_ORYSJ Pfam	3D model	Plant antimicrobial	Os11g0211800 protein	Oryza sativa Japonica Group	-	-	-
					MASTKMAVVA ILAALLLMAA VEPALATPPS LLPARKLQMP RLMDVVSAES KLACLPAGGF CMFRPMDCCG NCGCLYPVGV CYGSRCEE
	Jmol (6)6.0(2)8	U7DYR9_POPTR Pfam	3D model	Plant antimicrobial	Uncharacterized protein	Populus trichocarpa	-	-	-
					MDSKKVTLLL MVALVFVATI APSALAMRQF PLLMTSNILL QDESNLGCIS SGGWCFPNPK NCCGNCGCLY PIGICFGSDC

To display Sequence alignments OR Jmol Structural superimpositions of selected knottins:
1 - Use the checkboxes to make selection or use the 'Select All' button
2 - Choose either a 1D Sequence alignment or a 3D Structural superimposition